PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009799696.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 503aa    MW: 55607.3 Da    PI: 5.0443
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009799696.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS337.91.8e-1031174971374
            GRAS   1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlar..svselykal.ppsetseknsseelaalklfsevsP 89 
                     lv+lL+++Aea++  +++  la+ +L rl+elasp+g ++m+Rlaa+ft AL+a l +  s+s  +k++ +p+ ++e+++ ++laa++l++++sP
  XP_009799696.1 117 LVHLLMAAAEALTGVNKSreLARVVLVRLKELASPNGsTNMERLAAHFTDALQALLDGaaSGSLHAKSMfSPNYKDEQQQGDVLAAFQLLQDISP 211
                     68***********85554449****************99*****************994333333344447777888889*************** PP

            GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                     ++kf+h+taNqaIleav++++rvHi+D+di++G+QW++L+qaL sR++gpp  +lRiT+++++ sg  s  +++etg+rL+ fA ++g pf+f+ 
  XP_009799696.1 212 FVKFGHFTANQAILEAVAHDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPtpHLRITALSRSGSGrrSFGTVQETGRRLTAFAGSIGQPFSFHH 306
                     ***********************************************776556*********888899999************************ PP

            GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyysalfdslea 273
                        ++ e++++++L++ +gEa+++n++l+l ++  +  ++     ++L+  k+l+P++v++ve+e++   ++e F+ rf++ l++ysal+dslea
  XP_009799696.1 307 CRLDSDETFKPSTLKLVRGEAIIINCMLHLPHFTYRASDS---VASFLSGSKTLNPRLVTLVEEEVQPigEEEGFVGRFMDILHHYSALYDSLEA 398
                     9999****************************98554444...459*******************998777889********************* PP

            GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpL 367
                     ++p +s++r+ vEr++lg++i+  +a   + r e+++   +W e+l+++G+++ ++s  + +qaklll  ++ dgyrvee   + lvlgWk+r+L
  XP_009799696.1 399 GFPLQSRARALVERVFLGPRITGSLARIYRTRGEDER--CSWGEWLSAVGYRESNISFANHCQAKLLLGLFN-DGYRVEEIgTNKLVLGWKSRRL 490
                     *******************************988887..89*******************************.******9768999********* PP

            GRAS 368 vsvSaWr 374
                     +s+S W+
  XP_009799696.1 491 LSASIWT 497
                     ******6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.57791477IPR005202Transcription factor GRAS
PfamPF035146.4E-101117497IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MATMIVDDTI PDFDYYGGLS TPTTTTTTTT TSFSDDDRDH GCTWNDWSAV IDLDAFSGGD  60
NFQDLIESMI EGNNSSGGLN MNIPKSTTFY NSEDSVLMEE SEESNNNQSE DVNGLKLVHL  120
LMAAAEALTG VNKSRELARV VLVRLKELAS PNGSTNMERL AAHFTDALQA LLDGAASGSL  180
HAKSMFSPNY KDEQQQGDVL AAFQLLQDIS PFVKFGHFTA NQAILEAVAH DRRVHIVDYD  240
IMEGIQWASL MQALVSRKDG PPTPHLRITA LSRSGSGRRS FGTVQETGRR LTAFAGSIGQ  300
PFSFHHCRLD SDETFKPSTL KLVRGEAIII NCMLHLPHFT YRASDSVASF LSGSKTLNPR  360
LVTLVEEEVQ PIGEEEGFVG RFMDILHHYS ALYDSLEAGF PLQSRARALV ERVFLGPRIT  420
GSLARIYRTR GEDERCSWGE WLSAVGYRES NISFANHCQA KLLLGLFNDG YRVEEIGTNK  480
LVLGWKSRRL LSASIWTTPD SDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-4413749621374GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009799696.10.0PREDICTED: nodulation-signaling pathway 2 protein
RefseqXP_016459047.10.0PREDICTED: nodulation-signaling pathway 2 protein-like
SwissprotQ5NE240.0NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLM1AVQ80.0M1AVQ8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000314750.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA122411923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-153GRAS family protein